計算系統生物與醫學實驗室

LabComm.

Mon, 19 Oct 2009 05:29:49 GMT

2009 經濟日報清大唐傳義研發團隊研發「新型抗癌標靶抑制劑」

經濟日報 2009/10/19 10:03
清大唐傳義研發團隊研發「新型抗癌標靶抑制劑」

由清大資訊工程學系教授唐傳義帶領博士生石貴中，並結合中興大學、彰化師範大學共同研發的「新型抗癌標靶抑制劑」，目前已有相當成果，將技轉給生技公司及生技製藥廠。

2009 碩士班謝師宴

完整照片與影片請至 ftp (kitty) 的 Leisure/實驗室遊記下載。

實驗室電子書更新

更新實驗室電子書收藏。

Members

Sat, 10 Oct 2009 06:12:00 GMT

Current Members

Name	English Name	Contact	areas of interest
唐傳義教授	Prof. Tang	cytang@cs.nthu.edu.tw	analysis and design of algorithms, computational molecular biology, parallel processing and computer aided engineering.
張承文博士	Dr. Chang		GFESS group
林倩如		lchienju@gmail.com	R.A.
Ph.D Program Students
李孝屏		d908306@oz.nthu.edu.tw
徐婕婷		d918317@oz.nthu.edu.tw	Systems Biology group
彭士齊	Shih Chi Peng	shihchi@url.com.tw	Systems Biology group
邱奕彬		d914317@oz.nthu.edu.tw	GFESS group
林沿妊		d928307@oz.nthu.edu.tw	Systems Biology group
張君天		tcs@kitty.2y.idv.tw	GFESS group
王翔昱	Russ Hsiang-iu Wang	d936319@oz.nthu.edu.tw	Systems Biology group
劉俊毅		d938332@oz.nthu.edu.tw
朱家漢		d938301@oz.nthu.edu.tw	GFESS group
王鴻昌		d938346@oz.nthu.edu.tw
鄭佳揚		d938341@oz.nthu.edu.tw	GFESS group
賴俊吉		d938345@oz.nthu.edu.tw	GFESS group
張智宏		d948311@oz.nthu.edu.tw	GFESS group
林柏亨		d948334@oz.nthu.edu.tw	GFESS group
黃彥菱		d948307@oz.nthu.edu.tw
古天雄		21203@cch.org.tw
劉行琨		hsiungkl@libra.seed.net.tw
陳昱廷	Yu Tin Chen	g936742@oz.nthu.edu.tw	GFESS group
黃筌敬	Chuan Ching Huang	d9562861@oz.nthu.edu.tw	GFESS group
陳勇瑞		d9562866@oz.nthu.edu.tw
石貴中		shiuh0307@seed.net.tw	Drug Design
劉至善	Chih Shan Liu	d9562833@oz.nthu.edu.tw	Theory group
崔愷文		tsuei.kevin@gmail.com	Theory group
黃智沂	Chih Yi Huang	abnercyh@gmail.com	Systems Biology group
謝明峰		d9562563@oz.nthu.edu.tw	Systems Biology group
歐忠維		jongwaye@gmail.com	Systems Biology group
林鈺齊		yuchi.lin0531@gmail.com	Systems Biology group
李文斌		m09502047@chu.edu.tw
馬誠佑		brainbear@gmail.com	GFESS group
廖基復		fjliao@gmail.com	GFESS group
Master Program Students
康竹君	Jhu Jyun Kang	g9662584@oz.nthu.edu.tw	Systems Biology group
李道政		lovearcueid@gmail.com	GFESS group
洪蔚奇		wash878@hotmail.com	GFESS group
黃詩涵		denydie@hotmail.com	Systems Biology group
蔡宗頷		terrylexqq@gmail.com	Systems Biology group
吳宗倫		lun1116@yahoo.com.tw	Systems Biology group
盧振華		walterlu21@yahoo.com.tw	GFESS group
蔡金良		chinriryou@gmail.com	GFESS group

Former Members

Ph.D. Program Students

Name	English Name	Contact	areas of interest
梁秋國 (78)			算法分析與設計、平行處理、分散式計算
胡大雄 (79)		銘傳大學
蕭如淵 (80)			影像處理、資訊安全、演算法設計分析、圖形理論, 電子商務安全、多媒體系統
蔡英德	Prof. Yin Te Tsai		Algorithms, Bioinformatics, Information System, Computer Aided Education
陳文輝 (82)			網路通訊協定設計與分析、資訊安全
顏重功 (84)		世新大學
曾紹崟 (84)
徐道中 (85)
盧錦隆	Prof. Chin Lung Lu		Design and Analysis of Algorithms, Bioinformatic Algorithms, Combinatorial Optimization Algorithms, Graph Algorithms
方覺非 (87)			資料結構、演算法、平行計算、分散式計算、生物計算
吳邦一	Prof. Bang Ye Wu	樹德科大	algorithms, approximation algorithms, computational biology
彭勝龍 (87)			演算法設計、圖形理論、生物計算
呂柏寬 (87)
吳坤熹 (88)		暨南國際大學	VoiceXML, Authoring System, Anti-Spam Call Processing, Steganography, P2P VoIP/IM
吳文哲 (88)
呂芳誠 (89)
陳彥宏 (95)	Prof. Yen Hung Chen		演算法設計與分析、計算生物與生物資訊、資料探採、圖論、計算理論、協定工程測試
謝淑茹 (95)			比較基因體學
林英志 (96)	Dr. Ying Chih Lin		Computational Biology, Approximation Algorithm, Combinatorial or Graph Problems
鍾允昇 (96)			Data Fusion
彭千華 (97)			Systems Biology

Master Program Students

楊翊文 (94)	Ei-Wen Yang		楊巧筠 (94)
張成鈺 (94)			方忠和 (94)
蔡宗佑 (94)			黃振臺 (95)		g936325@oz.nthu.edu.tw
劉盈銓 (95)		g934313@oz.nthu.edu.tw	蔡皓璿 (95)		g934390@oz.nthu.edu.tw
呂昱翰 (96)	Yu Han Lyu	g944352@oz.nthu.edu.tw	張書豪 (96)		u9013007@yuntech.edu.tw
林國良 (96)		g946308@oz.nthu.edu.tw	邱玠欽 (96)	Chieh Chin Chiu	b9034018@student.nsysu.edu.tw
蘇育仁 (96)		yrsu@csie.nctu.edu.tw	葉庭熙 (96)		watermelon35@pchome.com.tw
許晏彰 (96)		arva.bt91@nctu.edu.tw	呂紹甲 (96)		g9562643@oz.nthu.edu.tw
張志榮 (96)		keith@ms4.url.com.tw	黃名遠 (97)		jeff74213@hotmail.com
張光延 (97)		arton0306@gmail.com

WorkGroups

Sat, 10 Oct 2009 06:11:00 GMT

There are four sub-groups in our Lab.

Theory group
- Focus on theoretical aspect of biocomputing and computer science, i.e., analysis and design of algorithms.
GFESS group
- Genomics, Function, Evolution, Sequence, Structure. We are developing tools that help enzyme biologists.
- An introductory slides
Systems Biology group
- Focus on construction and experimental validation of models that explain and predict the behavior of biological systems.
- An introductory slides

ContactUs

Fri, 11 Sep 2009 06:52:00 GMT

Location: 國立清華大學資訊工程學系，計算系統生物與醫學實驗室，清大5-18實驗室，綜合大樓5樓，新竹市光復路二段153號。
Location: Computational Systems Biology and Bio-Medicine Laboratory, Dept. of Computer Science, National Tsing Hua University. Room 5-18, General Building, no.153, Sec. 2, Kuang Fu Rd., Hsin Chu, Taiwan, 30013, R.O.C..
Mail Address: (300) 新竹市光復路二段101號，國立清華大學資訊工程學系，計算系統生物與生物醫學實驗室。
Mail Address: Computational Systems Biology and Bio-Medicine Laboratory, Department of Computer Science, National Tsing Hua University, 101, Kuang Fu Rd, Sec.2, HsingChu, Taiwan 300 R.O.C
TEL: +886-3-5714787 # 33560 (office, room 5-18)
TEL: +886-3-5714787 # 33596 (graduates, room 5-12)
FAX: +886-3-5723694

SiteTitle

Fri, 11 Sep 2009 06:52:00 GMT

計算系統生物與醫學實驗室

SiteSubtitle

Thu, 10 Sep 2009 20:24:00 GMT

Computational Systems Biology and Bio-Medicine Laboratory
Explore the world by the power of computation

MainMenu

Thu, 10 Sep 2009 20:20:00 GMT

Welcome

About CSBB Lab
Members
WorkGroups
Projects
Publications
Photos
Videos

Events
LabComm.
Seminars
LabMeetings

Resources
Conferences
Webmail
Courses
Server
Books
Tools

Links
Collaborations
Useful URLs

RSSFeed

ContactUs
Maintainer
EditManual
ReUse

This site uses TiddlyWiki 2.5.3

Videos

Thu, 10 Sep 2009 20:11:00 GMT

30 April 2007

Mpeg4 Format: It needs Codec H.264 + accplusv2

There are some DVD videos for sharing with Labmates. The files are compressed by tar and gzip.

Talk Series: Systems Biology and Computational Biology
- Professor Hamid Bolouri
- Professor Tatsuya Akutsu
An integrated computational approach to identifying regulating elements in yeast, Professor Wen Hsiung Li.
Biology: How to Write NSC Proposal

Welcome

Thu, 10 Sep 2009 20:11:00 GMT

Welcome to the homepage of

The Computational Systems Biology and Bio-Medicine Laboratory (CSBB Lab for short) of Department of Computer Science, National Tsing Hua University, is founded and directed by Prof. Tang.

For the coming Bio-tech. age, NTHU aims to bring together the research power of biology, mathematics, statistics, computer science, chemistry, and physics. NTHU plans to promote collaboration within the its area and beyond.

Traditional approach of biology was not sufficient to morden research. CSBB Lab dedicated to investigate problems in molecular biology by applying computational and mathematical techniques.

CSBB Lab consists of four WorkGroups; they cover fields of computer sicence and biology, e.g., analysis and design of algorithms, comparative genomics, systems biology. There is a slides which introduced our research in recent years

Prof. Tang has plentiful experiences to lead the cooperation of computer scientists and biologists. There are many different backgrounds students in our lab. Besides applying to graduate program of dept. of computer sicence , students who are interested in study biological information can join us via ISA. ISA provides graduate program of bioinformatics. The detailed information please refer 清華大學電機資訊學院生物資訊學程簡介.

What's Algorithm

The word algorithm comes from the name of the 9th century Persian mathematician Abu Abdullah Muhammad bin Musa al-Khwarizmi. In mathematics and computer science an algorithm is a finite set of well-defined instructions for accomplishing some task which, given an initial state, will terminate in a corresponding recognizable end-state. Algorithms can be implemented by computer programs. (learn more on Wikipedia)

What's Systems biology

Systems biology is the study of the interactions between the components of a biological system, and how these interactions give rise to the function and behaviour of that system (for example, the enzymes and metabolites in a metabolic pathway).

The systems biology approach often involves the development of mechanistic models, such as the reconstruction of dynamic systems from the quantitative properties of their elementary building blocks.
(learn more on Wikipedia)

What's Biocomputing

Biocomputing is an multidisciplinary study of biology and computer science for the theory and application of computational methods in problems of biological problems, e.g., sequence alignment, protein structure alignment, protein structure prediction, prediction of gene expression and protein-protein interactions. (learn more on PSB)

Older Version , Oldest Version of Lab homepage.

Publications

Thu, 10 Sep 2009 20:10:00 GMT

Underconstruction

Please refer Here

Seminars

Thu, 10 Sep 2009 20:10:00 GMT

LEAST Seminar focus on the related topics of algorithms.

Chairman: Prof. R. C. T. Lee
Time: Friday, pm 7:00~9:00
Place: Room 550, CSEE Building, NTHU.

The Schedlue of Presentation at LEAST Seminar

Prof. Tang

Thu, 10 Sep 2009 20:09:00 GMT

Chuan Yi Tang (唐傳義教授), Professor of Department of Computer Science, National Tsing Hua University (NTHU)

Personal Homepage
Tel: +886 3 5715131-1077
Fax: +886 3 572-3694
Email: cytang AT cs.nthu.edu.tw
Interests: Algorithm design, Parallel algorithms, Protocol testing,Computational biology
Courses
Publications

Some Talks

An Introduction to Computational Biology Laboratory

Projects

Thu, 10 Sep 2009 20:09:00 GMT

Underconstruction

Please refer Here

Photos

Thu, 10 Sep 2009 20:08:00 GMT

10 February 2006

實驗室於10月10日居辦團體出遊，地點是苗栗南庄。照片下載 (About 100 MB)

10 February 2006

Some pictures were taken by AbnerCYH. It is just for fun. View 2006-02-10

17 February 2006

Pictures of 2006 Spring Banquet. View 2006SpringBanquet

LabMeetings

Thu, 10 Sep 2009 20:07:00 GMT

Meeting Informations of Bioinformatics and Algorithms Lab of C.Y. Tang

Besides the group meetnings, there are two main meetings of our Lab, i.e., the Lab meeting and LEAST Seminar. Currently, the organizer is Chih Shan Liu. Please mail to her for any questions about Lab meeting and LEAST Seminar.

The folloing quote is from the Liu's inner mail. Please follows those requirements.

報告順序的安排，若是有人主動提報告時間為最優先。

若都沒人主動，我的順序是按照離上次報告最遠的人開始排。

並避開需要資格考的成員的前八週與後四週，

於每月底寄發通知信通知下兩個月應報告成員。

我會在學期開始前至少一個月將本學期的報告順序排定，

請各位至少要在輪到自己的一個半月前(即6週)提出延後的要求。

較能避免順序調動造成對其他人無預期提前而準備時間不足的困擾，

更改後的次序我會直接在網頁上更改。

若是臨時有事，則煩請自行與實驗室其他成員協調，

若對方已在名單上，採報告日期對換的方式。

若對方不在名單上，則煩請寄給我下次確認能夠報告的時間。

Information for Prospective Graduate Students and Interns

Thu, 10 Sep 2009 20:06:00 GMT

Recommanded Articles
Some undergraduate-level articles make you know more about our works.

The Small-World Phenomenon and Decentralized Search, by Jon Kleinberg, SIAM News, Volume 37, Number 3, April 2004
閑話神經科學(10) 網絡新世界社會網絡分析(Social Network Analysis), 謝豐舟教授
An Introduction to Bioinformatics Algorithms by Jones and Pevzner.
The relationship of computational biology, algorithms and complexity : A schematic view of Algorithms and Complexity, by Avrim Blum.
生物資訊學簡介, 謝昌煥, 國網中心生物知識庫與生物資訊系統.
Bioinformatics and computational biology - Wikipedia, the free encyclopedia.
Systems biology - Wikipedia, the free encyclopedia
Empirical Methods in CS and AI, collected by Toby Walsh
On The Emerging Future of Complexity Sciences, by Kemal A. Delic & Ralph Dum , Ubiquity (ACM's IT opinion magazine)
Harvard multimedia: The Inner Life of a Cell. SIGGRAPH AWARD WINNING ANIMATION.
Baxter SM, Day SW, Fetrow JS, Reisinger SJ (2006) Scientific Software Development Is Not an Oxymoron. PLoS Comput Biol 2(9): e87
An Introduction to Drug Discovery and Development, Network Science Center

More about algorithms | systems biology

DefaultTiddlers

Thu, 10 Sep 2009 20:05:00 GMT

Welcome
Information for Prospective Graduate Students and Interns

LabComm.
ContactUs

Courses

Thu, 10 Sep 2009 20:04:00 GMT

Links to courses offered by members of AB Lab

Fall 2009

實驗室新生訓練Slides

Fall 2007

系統生物學概論 Introduction to Systems Biology, Prof. Chuan Yi Tang, Prof. Yung Jen Chunag, Prof. David Shan Hill Wong, CourseWeb
計算方法專題二 Special Topics in Algorithms II, Prof. Chuan Yi Tang.
計算機系統管理 Computer System Administration, 張君天 CourseWeb

Spring 2006

計算方法設計 Design and Analysis of Algorithms, Prof. Chuan Yi Tang, CourseWeb
計算生物學 Computing Biology, Prof. Chin Lung Lu, Prof. Chuan Yi Tang, CourseMaterials
計算方法專題二 Special Topics in Algorithms II, Prof. Chuan Yi Tang.
計算機系統管理 Computer System Administration, 張君天 CourseMaterials

Fall 2005

計算方法專題一 Special Topics in Designs of Algorithms I, Prof. Chuan Yi Tang
系統生物學概論 Introduction to Systems Biology, Prof. Chuan Yi Tang, Prof. Yung Jen Chunag, Prof. David Shan Hill Wong, CourseWeb (Password Required)

Collaborations

Thu, 10 Sep 2009 20:03:00 GMT

Algorithm & Biocomputing LAB of Dept. of Computer Science and Information Engineering, National Chi Nan University.
Bioinformatic Algorithm Laboratory of Institute of Bioinformatics, National Chiao Tung University.
Laboratory of Algorithms and Data Structures design, National Tsing Hua University

Books

Thu, 10 Sep 2009 20:02:00 GMT

Last Update: 2009-04-24

唐老師規定實驗室成員借閱書籍有分：原文書應借閱＂影印本＂、中文書可藉原版書。借閱 Room 5-18 書櫥之書籍請跟助理(明芳)登記。

實驗室電子書

目前由 Abner Chih Yi Huang 維護
查詢網頁為 ebooks (鎖實驗室IP，校外或宿舍請用 VPN)

Room 5-18 書櫥

書籍明細

Room 5-12 書櫥

Book
Introduction to Algorithms
The probabilistic method
Introduction to the design and analysis of algorithms
Computational Geometry for Design and Manufacture
Algorithmic Graph Theory and Perfect Graphs
Computational Complexity of Sequential and Parallel Algorithms
Bioinformatics: Sequence and Genome Analysis
Programming Pearls
PHP 4 互動式網頁資料庫
PHP 程式設計專家必備手冊
實用C程式語言入門篇

Proceeding4
18th ICPR Volume 1
18th ICPR Volume 2
18th ICPR Volume 3
18th ICPR Volume 4
18th ICPR Supplemental *2
18th ICPR Final Program *2
Symposium of the National Research Program for Genomic Medicine (V)
FOCS 81~90
STOC 82~89 少87
SODA 91~94
Algorithmica 1998 vol 3 no 3
Algorithmica 1998 vol 3 no 1
Algorithmica 1998 vol 2 no 1
ISAAC 93
19th Workshop on Combinatorial Mathematics and Computation Theory
Symposium on Computational Geometry 85~92 少86,90
International Journal of Computational Geometry and Application 1993 Volume 3 No 3
International Conference on Parallel Processing 90~91 81~88 76~77
Parallel Processing Letters 1993 Volume 3 no 3
Supercomputing 89~92
Hypercube Multiprocessor 86, 87
ICS 90, 92
ICPADS 90, 93, 94
SHPCC 92
Workshop on Systolic Array

Thesis
在分散式記憶體的多重電腦之中得到細粒平行度
基於類神經網路與向量支持機的階層式學習架構及其餘蛋白質結構分類之應用

計算系統生物與醫學實驗室

LabComm.

2009 經濟日報 清大唐傳義研發團隊 研發「新型抗癌標靶抑制劑」

2009 碩士班謝師宴

實驗室電子書更新

Members

Current Members

Former Members

WorkGroups

ContactUs

SiteTitle

SiteSubtitle

MainMenu

Videos

30 April 2007

Welcome

Publications

Seminars

Prof. Tang

Projects

Photos

10 February 2006

10 February 2006

17 February 2006

LabMeetings

Information for Prospective Graduate Students and Interns

DefaultTiddlers

Courses

Fall 2009

Fall 2007

Spring 2006

Fall 2005

Collaborations

Books

Last Update: 2009-04-24

實驗室電子書

Room 5-18 書櫥

Room 5-12 書櫥

2009 經濟日報清大唐傳義研發團隊研發「新型抗癌標靶抑制劑」